![]() ![]() Thanks to for adding teh -ignoreD option to the genomecov tool, which allows D CIGAR operations to be ignored when calculating coverage.John Marshall cleaned up some lingering data type problems in the slop tool.These changes also squash a bug that arises on Debian systems. Thanks to John Marshall (github: who improved the stability and cleanliness of the code used for random number generation.These changes result in a 2-3X improvement in speed, depending on input types, options, etc. It turns our that these tasks consume a large proportion of run time, especially as input files increase in size. Thanks to Hao Hou (github: we have substantial improvements in the speed associated with parsing input files and in printing results. ![]()
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